
RAxML-NG v. 1.1.0-master released on 29.11.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: AMD EPYC 7742 64-Core Processor, 128 cores, 251 GB RAM

RAxML-NG was called at 13-Feb-2023 00:55:52 as follows:

raxml-ng --threads 80 --force perf_threads -msa infile.txt --workers 20 --bs-trees autoMRE{1000} --all --prefix T1 --model LG+G

Analysis options:
  run mode: ML tree search + bootstrapping (Felsenstein Bootstrap)
  start tree(s): random (10) + parsimony (10)
  bootstrap replicates: max: 1000 + bootstopping (autoMRE, cutoff: 0.030000)
  random seed: 1676278552
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  lh-epsilon during autodetect spr rounds: 10.000000
  lh-epsilon during fast spr rounds: 10.000000
  lh-epsilon during slow spr rounds: 10.000000
  lh-epsilon for full brlen opt: 10.000000
  lh-epsilon for triplet brlen opt: 1000.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (20 workers), PTHREADS (80 threads), thread pinning: OFF

WARNING: Running in FORCE mode: some safety checks are disabled!

[00:00:00] Reading alignment from file: infile.txt
[00:00:00] Loaded alignment with 493 taxa and 3425 sites

Alignment comprises 1 partitions and 2425 patterns

Partition 0: noname
Model: LG+G4m
Alignment sites / patterns: 3425 / 2425
Gaps: 88.66 %
Invariant sites: 40.09 %


NOTE: Binary MSA file created: T1.raxml.rba

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 10 random starting tree(s) with 493 taxa
[00:00:00] Generating 10 parsimony starting tree(s) with 493 taxa
Parsimony score: 66872
Parsimony score: 66826
Parsimony score: 66949
Parsimony score: 66776
Parsimony score: 66978
Parsimony score: 66847
Parsimony score: 66896
Parsimony score: 66947
Parsimony score: 66946
Parsimony score: 66964
[00:00:02] Data distribution: max. partitions/sites/weight per thread: 1 / 607 / 48560
[00:00:02] Data distribution: max. searches per worker: 51

Starting ML tree search with 20 distinct starting trees


RAxML-NG v. 1.1.0-master released on 29.11.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: AMD EPYC 7742 64-Core Processor, 128 cores, 251 GB RAM

RAxML-NG was called at 13-Feb-2023 01:40:46 as follows:

raxml-ng --threads 80 --force perf_threads -msa infile.txt --workers 20 --bs-trees autoMRE{1000} --all --prefix T1 --model LG+G

Analysis options:
  run mode: ML tree search + bootstrapping (Felsenstein Bootstrap)
  start tree(s): random (10) + parsimony (10)
  bootstrap replicates: max: 1000 + bootstopping (autoMRE, cutoff: 0.030000)
  random seed: 1676281246
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  lh-epsilon during autodetect spr rounds: 10.000000
  lh-epsilon during fast spr rounds: 10.000000
  lh-epsilon during slow spr rounds: 10.000000
  lh-epsilon for full brlen opt: 10.000000
  lh-epsilon for triplet brlen opt: 1000.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (20 workers), PTHREADS (80 threads), thread pinning: OFF

WARNING: Running in FORCE mode: some safety checks are disabled!

WARNING: The model you specified on the command line (LG+G) will be ignored 
         since the binary MSA file already contains a model definition.
         If you want to change the model, please re-run RAxML-NG 
         with the original PHYLIP/FASTA alignment and --redo option.

[00:00:00] Loading binary alignment from file: T1.raxml.rba
[00:00:00] Alignment comprises 493 taxa, 1 partitions and 2425 patterns

Partition 0: noname
Model: LG+G4m
Alignment sites / patterns: 3425 / 2425
Gaps: 88.66 %
Invariant sites: 40.09 %


Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] NOTE: Resuming execution from checkpoint (logLH: -303639.82, ML trees: 0, bootstraps: 0)
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 607 / 48560
[00:00:00] Data distribution: max. searches per worker: 51

Starting ML tree search with 20 distinct starting trees

[00:21:01] [worker #16] ML tree search #17, logLikelihood: -294812.718627
[00:21:56] [worker #18] ML tree search #19, logLikelihood: -294813.508738
[00:23:43] [worker #17] ML tree search #18, logLikelihood: -294817.196540
[00:28:07] [worker #19] ML tree search #20, logLikelihood: -294815.050719
[00:30:50] [worker #12] ML tree search #13, logLikelihood: -294784.314876
[00:31:01] [worker #14] ML tree search #15, logLikelihood: -294809.818735
[00:31:51] [worker #13] ML tree search #14, logLikelihood: -294787.415573
[00:40:40] [worker #11] ML tree search #12, logLikelihood: -294815.514020
[00:44:13] [worker #15] ML tree search #16, logLikelihood: -294796.755405
[00:46:07] [worker #6] ML tree search #7, logLikelihood: -294816.976361
[00:46:25] [worker #0] ML tree search #1, logLikelihood: -294792.650107
[00:47:35] [worker #9] ML tree search #10, logLikelihood: -294790.267060
[00:48:27] [worker #10] ML tree search #11, logLikelihood: -294813.814510
[00:50:46] [worker #5] ML tree search #6, logLikelihood: -294825.903748
[00:50:59] [worker #1] ML tree search #2, logLikelihood: -294807.208915
[00:51:13] [worker #7] ML tree search #8, logLikelihood: -294792.741573
[00:51:54] [worker #8] ML tree search #9, logLikelihood: -294800.860291
[00:52:43] [worker #2] ML tree search #3, logLikelihood: -294829.557254
[00:52:49] [worker #4] ML tree search #5, logLikelihood: -294792.982324
[00:53:42] [worker #3] ML tree search #4, logLikelihood: -294790.091097

[00:53:42] ML tree search completed, best tree logLH: -294784.314876

[00:53:42] Starting bootstrapping analysis with 1000 replicates.

[01:25:01] [worker #16] Bootstrap tree #17, logLikelihood: -273623.090977
[01:25:58] [worker #19] Bootstrap tree #20, logLikelihood: -301278.147398
[01:26:12] [worker #18] Bootstrap tree #19, logLikelihood: -286574.053379
[01:29:48] [worker #17] Bootstrap tree #18, logLikelihood: -299220.484928
[01:30:55] [worker #8] Bootstrap tree #9, logLikelihood: -260418.295701
[01:31:57] [worker #12] Bootstrap tree #13, logLikelihood: -281137.102345
[01:32:18] [worker #0] Bootstrap tree #1, logLikelihood: -278576.761929
[01:32:37] [worker #6] Bootstrap tree #7, logLikelihood: -280065.387483
[01:32:38] [worker #11] Bootstrap tree #12, logLikelihood: -307080.084016
[01:33:09] [worker #4] Bootstrap tree #5, logLikelihood: -321300.925432
[01:33:51] [worker #5] Bootstrap tree #6, logLikelihood: -296912.722966
[01:33:56] [worker #7] Bootstrap tree #8, logLikelihood: -288300.109379
[01:34:33] [worker #2] Bootstrap tree #3, logLikelihood: -304186.532156
[01:34:44] [worker #15] Bootstrap tree #16, logLikelihood: -286920.058558
[01:34:58] [worker #10] Bootstrap tree #11, logLikelihood: -291073.969587
[01:35:18] [worker #14] Bootstrap tree #15, logLikelihood: -271969.061842
[01:36:10] [worker #1] Bootstrap tree #2, logLikelihood: -277015.144056
[01:36:39] [worker #9] Bootstrap tree #10, logLikelihood: -309215.743054
[01:36:51] [worker #3] Bootstrap tree #4, logLikelihood: -321319.783431
[01:40:08] [worker #13] Bootstrap tree #14, logLikelihood: -278835.250271
[01:57:16] [worker #16] Bootstrap tree #37, logLikelihood: -297073.593987
[01:58:31] [worker #18] Bootstrap tree #39, logLikelihood: -302697.377872
[01:58:42] [worker #19] Bootstrap tree #40, logLikelihood: -280952.075147
[02:02:31] [worker #17] Bootstrap tree #38, logLikelihood: -288985.642050
[02:11:28] [worker #0] Bootstrap tree #21, logLikelihood: -301888.885616
[02:11:46] [worker #11] Bootstrap tree #32, logLikelihood: -293864.970367
[02:12:12] [worker #6] Bootstrap tree #27, logLikelihood: -311573.582995
[02:12:34] [worker #4] Bootstrap tree #25, logLikelihood: -288304.335009
[02:12:43] [worker #14] Bootstrap tree #35, logLikelihood: -291882.105959
[02:13:12] [worker #3] Bootstrap tree #24, logLikelihood: -283776.039638
[02:14:10] [worker #5] Bootstrap tree #26, logLikelihood: -292282.435751
[02:14:56] [worker #10] Bootstrap tree #31, logLikelihood: -283926.070816
[02:15:19] [worker #9] Bootstrap tree #30, logLikelihood: -302317.985828
[02:15:37] [worker #15] Bootstrap tree #36, logLikelihood: -289650.704079
[02:16:05] [worker #2] Bootstrap tree #23, logLikelihood: -311719.942444
[02:17:04] [worker #7] Bootstrap tree #28, logLikelihood: -287412.483754
[02:17:42] [worker #12] Bootstrap tree #33, logLikelihood: -285794.099333
[02:18:08] [worker #8] Bootstrap tree #29, logLikelihood: -294166.654491
[02:18:35] [worker #13] Bootstrap tree #34, logLikelihood: -303499.159932
[02:18:39] [worker #1] Bootstrap tree #22, logLikelihood: -279330.134172
[02:49:14] [worker #0] Bootstrap tree #41, logLikelihood: -285666.495271
[02:50:59] [worker #2] Bootstrap tree #43, logLikelihood: -292842.785256
[02:52:15] [worker #8] Bootstrap tree #49, logLikelihood: -310310.427689
[02:52:23] [worker #6] Bootstrap tree #47, logLikelihood: -301956.522350
[02:52:43] [worker #7] Bootstrap tree #48, logLikelihood: -295138.494152
[02:53:08] [worker #9] Bootstrap tree #50, logLikelihood: -297233.624889
[02:53:11] [worker #4] Bootstrap tree #45, logLikelihood: -303382.018044
[02:54:08] [worker #1] Bootstrap tree #42, logLikelihood: -280992.908947
[02:55:08] [worker #5] Bootstrap tree #46, logLikelihood: -281455.733228
[02:55:58] [worker #3] Bootstrap tree #44, logLikelihood: -296910.596233
[03:29:14] [worker #18] Bootstrap tree #59, logLikelihood: -288773.048408
[03:31:14] [worker #16] Bootstrap tree #57, logLikelihood: -304895.501448
[03:31:51] [worker #19] Bootstrap tree #60, logLikelihood: -307946.764498
[03:32:07] [worker #17] Bootstrap tree #58, logLikelihood: -284371.494782
[03:34:36] [worker #11] Bootstrap tree #52, logLikelihood: -278115.477312
[03:34:43] [worker #2] Bootstrap tree #63, logLikelihood: -298234.462082
[03:34:51] [worker #10] Bootstrap tree #51, logLikelihood: -294394.285347
[03:35:50] [worker #4] Bootstrap tree #65, logLikelihood: -292426.011977
[03:36:14] [worker #3] Bootstrap tree #64, logLikelihood: -280858.149675
[03:36:49] [worker #12] Bootstrap tree #53, logLikelihood: -299406.882337
[03:37:23] [worker #0] Bootstrap tree #61, logLikelihood: -286052.673413
[03:37:48] [worker #6] Bootstrap tree #67, logLikelihood: -308464.066525
[03:38:14] [worker #13] Bootstrap tree #54, logLikelihood: -293138.590216
[03:38:20] [worker #1] Bootstrap tree #62, logLikelihood: -308176.581470
[03:38:22] [worker #7] Bootstrap tree #68, logLikelihood: -289028.828652
[03:38:29] [worker #5] Bootstrap tree #66, logLikelihood: -302984.730404
[03:38:54] [worker #8] Bootstrap tree #69, logLikelihood: -309098.831829
[03:39:06] [worker #15] Bootstrap tree #56, logLikelihood: -285397.404358
[03:39:52] [worker #9] Bootstrap tree #70, logLikelihood: -293129.264170
[03:40:12] [worker #14] Bootstrap tree #55, logLikelihood: -284326.507359
[04:00:06] [worker #18] Bootstrap tree #79, logLikelihood: -283398.487694
[04:07:27] [worker #19] Bootstrap tree #80, logLikelihood: -294074.494321
[04:07:46] [worker #17] Bootstrap tree #78, logLikelihood: -290619.145692
[04:08:34] [worker #16] Bootstrap tree #77, logLikelihood: -327083.910620
[04:10:35] [worker #10] Bootstrap tree #71, logLikelihood: -293658.535584
[04:12:19] [worker #4] Bootstrap tree #85, logLikelihood: -300564.682910
[04:13:13] [worker #3] Bootstrap tree #84, logLikelihood: -273527.095987
[04:14:52] [worker #2] Bootstrap tree #83, logLikelihood: -317670.301170
[04:15:13] [worker #15] Bootstrap tree #76, logLikelihood: -274387.009070
[04:16:11] [worker #0] Bootstrap tree #81, logLikelihood: -282639.942680
[04:16:12] [worker #11] Bootstrap tree #72, logLikelihood: -299254.488517
[04:16:28] [worker #6] Bootstrap tree #87, logLikelihood: -291426.956515
[04:16:53] [worker #12] Bootstrap tree #73, logLikelihood: -289318.323124
[04:17:35] [worker #13] Bootstrap tree #74, logLikelihood: -302530.542900
[04:17:48] [worker #5] Bootstrap tree #86, logLikelihood: -298518.829415
[04:19:03] [worker #14] Bootstrap tree #75, logLikelihood: -294122.892321
[04:19:13] [worker #7] Bootstrap tree #88, logLikelihood: -300072.403551
[04:19:22] [worker #8] Bootstrap tree #89, logLikelihood: -295009.367392
[04:19:28] [worker #9] Bootstrap tree #90, logLikelihood: -303797.384664
[04:21:15] [worker #1] Bootstrap tree #82, logLikelihood: -303236.462717
[04:35:32] [worker #18] Bootstrap tree #99, logLikelihood: -314060.048461
[04:38:42] [worker #17] Bootstrap tree #98, logLikelihood: -287421.894494
[04:39:02] [worker #19] Bootstrap tree #100, logLikelihood: -297268.156970
[04:41:15] [worker #16] Bootstrap tree #97, logLikelihood: -299979.908921
[04:45:01] [worker #10] Bootstrap tree #91, logLikelihood: -292387.288230
[04:48:17] [worker #11] Bootstrap tree #92, logLikelihood: -282174.320473
[04:49:09] [worker #15] Bootstrap tree #96, logLikelihood: -299981.239226
[04:50:08] [worker #12] Bootstrap tree #93, logLikelihood: -274222.379559
[04:53:25] [worker #13] Bootstrap tree #94, logLikelihood: -278777.519877
[04:56:02] [worker #14] Bootstrap tree #95, logLikelihood: -292282.146617

RAxML-NG v. 1.1.0-master released on 29.11.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: AMD EPYC 7742 64-Core Processor, 128 cores, 251 GB RAM

RAxML-NG was called at 13-Feb-2023 06:47:18 as follows:

raxml-ng --threads 80 --force perf_threads -msa infile.txt --workers 20 --bs-trees autoMRE{200} --all --prefix T1 --model LG+G

Analysis options:
  run mode: ML tree search + bootstrapping (Felsenstein Bootstrap)
  start tree(s): random (10) + parsimony (10)
  bootstrap replicates: max: 200 + bootstopping (autoMRE, cutoff: 0.030000)
  random seed: 1676299638
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  lh-epsilon during autodetect spr rounds: 10.000000
  lh-epsilon during fast spr rounds: 10.000000
  lh-epsilon during slow spr rounds: 10.000000
  lh-epsilon for full brlen opt: 10.000000
  lh-epsilon for triplet brlen opt: 1000.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (20 workers), PTHREADS (80 threads), thread pinning: OFF

WARNING: Running in FORCE mode: some safety checks are disabled!

WARNING: The model you specified on the command line (LG+G) will be ignored 
         since the binary MSA file already contains a model definition.
         If you want to change the model, please re-run RAxML-NG 
         with the original PHYLIP/FASTA alignment and --redo option.

[00:00:00] Loading binary alignment from file: T1.raxml.rba
[00:00:00] Alignment comprises 493 taxa, 1 partitions and 2425 patterns

Partition 0: noname
Model: LG+G4m
Alignment sites / patterns: 3425 / 2425
Gaps: 88.66 %
Invariant sites: 40.09 %


Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] NOTE: Resuming execution from checkpoint (logLH: -338463.53, ML trees: 20, bootstraps: 100)
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 607 / 48560
[00:00:00] Data distribution: max. searches per worker: 5

Starting ML tree search with 20 distinct starting trees


[00:00:00] ML tree search completed, best tree logLH: -294784.314876

[00:00:00] Starting bootstrapping analysis with 200 replicates.

[00:30:21] [worker #18] Bootstrap tree #119, logLikelihood: -291021.177196
[00:33:17] [worker #17] Bootstrap tree #118, logLikelihood: -304242.629472
[00:34:19] [worker #16] Bootstrap tree #117, logLikelihood: -272805.227109
[00:34:32] [worker #3] Bootstrap tree #104, logLikelihood: -294987.567771
[00:35:45] [worker #19] Bootstrap tree #120, logLikelihood: -295471.055533
[00:35:46] [worker #12] Bootstrap tree #113, logLikelihood: -295429.647224
[00:35:57] [worker #5] Bootstrap tree #106, logLikelihood: -285742.866638
[00:36:18] [worker #6] Bootstrap tree #107, logLikelihood: -301152.178655
[00:36:24] [worker #2] Bootstrap tree #103, logLikelihood: -294792.742255
[00:36:48] [worker #4] Bootstrap tree #105, logLikelihood: -294360.115737
[00:36:59] [worker #8] Bootstrap tree #109, logLikelihood: -294870.499625
[00:37:33] [worker #0] Bootstrap tree #101, logLikelihood: -286650.880027
[00:38:09] [worker #11] Bootstrap tree #112, logLikelihood: -273676.360447
[00:38:10] [worker #9] Bootstrap tree #110, logLikelihood: -299213.900961
[00:38:21] [worker #13] Bootstrap tree #114, logLikelihood: -298349.284479
[00:38:55] [worker #1] Bootstrap tree #102, logLikelihood: -309207.548716
[00:40:56] [worker #14] Bootstrap tree #115, logLikelihood: -289912.678675
[00:43:05] [worker #7] Bootstrap tree #108, logLikelihood: -291472.951279
[00:43:50] [worker #15] Bootstrap tree #116, logLikelihood: -296614.240027
[00:50:02] [worker #10] Bootstrap tree #111, logLikelihood: -298659.437948
[01:02:58] [worker #18] Bootstrap tree #139, logLikelihood: -286632.495532
[01:07:18] [worker #16] Bootstrap tree #137, logLikelihood: -301668.267590
[01:07:23] [worker #19] Bootstrap tree #140, logLikelihood: -288326.859528
[01:07:28] [worker #17] Bootstrap tree #138, logLikelihood: -279977.035180
[01:11:31] [worker #3] Bootstrap tree #124, logLikelihood: -297937.626096
[01:13:41] [worker #4] Bootstrap tree #125, logLikelihood: -285009.857700
[01:13:59] [worker #12] Bootstrap tree #133, logLikelihood: -301068.461436
[01:14:10] [worker #2] Bootstrap tree #123, logLikelihood: -297390.238506
[01:15:13] [worker #8] Bootstrap tree #129, logLikelihood: -296040.000000
[01:15:47] [worker #6] Bootstrap tree #127, logLikelihood: -283094.348424
[01:15:58] [worker #11] Bootstrap tree #132, logLikelihood: -310691.752441
[01:16:54] [worker #5] Bootstrap tree #126, logLikelihood: -315893.570047
[01:17:45] [worker #9] Bootstrap tree #130, logLikelihood: -282798.512015
[01:18:03] [worker #0] Bootstrap tree #121, logLikelihood: -314970.529086
[01:19:25] [worker #1] Bootstrap tree #122, logLikelihood: -317346.528953
[01:21:04] [worker #14] Bootstrap tree #135, logLikelihood: -301586.317199
[01:22:10] [worker #15] Bootstrap tree #136, logLikelihood: -282739.171633
[01:22:43] [worker #7] Bootstrap tree #128, logLikelihood: -292417.891559
[01:23:05] [worker #13] Bootstrap tree #134, logLikelihood: -299248.378253
[01:27:04] [worker #10] Bootstrap tree #131, logLikelihood: -290981.904503
[01:48:19] [worker #8] Bootstrap tree #149, logLikelihood: -295043.480029
[01:51:27] [worker #2] Bootstrap tree #143, logLikelihood: -292666.462767
[01:52:17] [worker #9] Bootstrap tree #150, logLikelihood: -296039.757707
[01:53:00] [worker #3] Bootstrap tree #144, logLikelihood: -306960.645624
[01:53:44] [worker #4] Bootstrap tree #145, logLikelihood: -300820.171039
[01:54:51] [worker #5] Bootstrap tree #146, logLikelihood: -303853.381504
[01:56:07] [worker #7] Bootstrap tree #148, logLikelihood: -284576.664084
[01:57:07] [worker #0] Bootstrap tree #141, logLikelihood: -306124.949204
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[02:00:03] [worker #6] Bootstrap tree #147, logLikelihood: -318830.336951
[02:31:49] [worker #16] Bootstrap tree #157, logLikelihood: -281590.896110
[02:32:38] [worker #18] Bootstrap tree #159, logLikelihood: -269337.938301
[02:32:50] [worker #19] Bootstrap tree #160, logLikelihood: -300524.279731
[02:36:16] [worker #17] Bootstrap tree #158, logLikelihood: -294273.195492
[02:38:01] [worker #0] Bootstrap tree #161, logLikelihood: -299998.093763
[02:38:07] [worker #13] Bootstrap tree #154, logLikelihood: -278310.273484
[02:38:28] [worker #2] Bootstrap tree #163, logLikelihood: -289831.896307
[02:39:37] [worker #10] Bootstrap tree #151, logLikelihood: -289226.460702
[02:39:45] [worker #5] Bootstrap tree #166, logLikelihood: -290095.937301
[02:40:29] [worker #12] Bootstrap tree #153, logLikelihood: -280610.410611
[02:40:31] [worker #6] Bootstrap tree #167, logLikelihood: -295385.350724
[02:40:46] [worker #7] Bootstrap tree #168, logLikelihood: -278100.425214
[02:40:55] [worker #11] Bootstrap tree #152, logLikelihood: -296092.404515
[02:41:24] [worker #8] Bootstrap tree #169, logLikelihood: -294062.962259
[02:41:53] [worker #9] Bootstrap tree #170, logLikelihood: -304974.764388
[02:41:57] [worker #4] Bootstrap tree #165, logLikelihood: -296753.063292
[02:42:09] [worker #15] Bootstrap tree #156, logLikelihood: -292380.242448
[02:42:45] [worker #1] Bootstrap tree #162, logLikelihood: -318251.482901
[02:44:48] [worker #3] Bootstrap tree #164, logLikelihood: -302348.081743
[02:46:27] [worker #14] Bootstrap tree #155, logLikelihood: -285543.659907
[03:05:08] [worker #18] Bootstrap tree #179, logLikelihood: -299154.396667
[03:06:29] [worker #19] Bootstrap tree #180, logLikelihood: -284757.439826
[03:08:39] [worker #17] Bootstrap tree #178, logLikelihood: -298847.931682
[03:12:57] [worker #16] Bootstrap tree #177, logLikelihood: -310003.842804
[03:17:20] [worker #13] Bootstrap tree #174, logLikelihood: -289610.209132
[03:17:20] [worker #2] Bootstrap tree #183, logLikelihood: -298666.872033
[03:18:09] [worker #10] Bootstrap tree #171, logLikelihood: -288005.978213
[03:19:30] [worker #4] Bootstrap tree #185, logLikelihood: -296309.771056
[03:19:35] [worker #8] Bootstrap tree #189, logLikelihood: -299811.616729
[03:19:42] [worker #12] Bootstrap tree #173, logLikelihood: -313782.063243
[03:19:55] [worker #5] Bootstrap tree #186, logLikelihood: -287230.605257
[03:20:26] [worker #6] Bootstrap tree #187, logLikelihood: -297851.559036
[03:20:43] [worker #3] Bootstrap tree #184, logLikelihood: -279992.504007
[03:21:01] [worker #11] Bootstrap tree #172, logLikelihood: -297515.340111
[03:21:14] [worker #15] Bootstrap tree #176, logLikelihood: -286890.251788
[03:21:29] [worker #0] Bootstrap tree #181, logLikelihood: -303359.191633
[03:21:35] [worker #7] Bootstrap tree #188, logLikelihood: -303299.278141
[03:22:04] [worker #9] Bootstrap tree #190, logLikelihood: -301632.572518
[03:22:26] [worker #1] Bootstrap tree #182, logLikelihood: -292468.083158
[03:22:50] [worker #14] Bootstrap tree #175, logLikelihood: -268221.988559
[03:38:43] [worker #18] Bootstrap tree #199, logLikelihood: -312527.078491
[03:40:52] [worker #19] Bootstrap tree #200, logLikelihood: -303351.115529
[03:46:09] [worker #16] Bootstrap tree #197, logLikelihood: -302665.796125
[03:46:25] [worker #17] Bootstrap tree #198, logLikelihood: -314024.822528
[03:50:46] [worker #11] Bootstrap tree #192, logLikelihood: -305579.754008
[03:50:58] [worker #10] Bootstrap tree #191, logLikelihood: -313943.078629
[03:53:12] [worker #13] Bootstrap tree #194, logLikelihood: -284225.266328
[03:53:45] [worker #12] Bootstrap tree #193, logLikelihood: -296262.600367
[03:58:09] [worker #14] Bootstrap tree #195, logLikelihood: -311809.874002
[04:01:20] [worker #15] Bootstrap tree #196, logLikelihood: -290306.306993

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: GAMMA (4 cats, mean),  alpha: 1.952213 (ML),  weights&rates: (0.250000,0.287503) (0.250000,0.649834) (0.250000,1.068747) (0.250000,1.993917) 
   Base frequencies (model): 0.079066 0.055941 0.041977 0.053052 0.012937 0.040767 0.071586 0.057337 0.022355 0.062157 0.099081 0.064600 0.022951 0.042302 0.044040 0.061197 0.053287 0.012066 0.034155 0.069147 
   Substitution rates (model): 0.425093 0.276818 0.395144 2.489084 0.969894 1.038545 2.066040 0.358858 0.149830 0.395337 0.536518 1.124035 0.253701 1.177651 4.727182 2.139501 0.180717 0.218959 2.547870 0.751878 0.123954 0.534551 2.807908 0.363970 0.390192 2.426601 0.126991 0.301848 6.326067 0.484133 0.052722 0.332533 0.858151 0.578987 0.593607 0.314440 0.170887 5.076149 0.528768 1.695752 0.541712 1.437645 4.509238 0.191503 0.068427 2.145078 0.371004 0.089525 0.161787 4.008358 2.000679 0.045376 0.612025 0.083688 0.062556 0.523386 5.243870 0.844926 0.927114 0.010690 0.015076 0.282959 0.025548 0.017416 0.394456 1.240275 0.425860 0.029890 0.135107 0.037967 0.084808 0.003499 0.569265 0.640543 0.320627 0.594007 0.013266 0.893680 1.105251 0.075382 2.784478 1.143480 0.670128 1.165532 1.959291 4.128591 0.267959 4.813505 0.072854 0.582457 3.234294 1.672569 0.035855 0.624294 1.223828 1.080136 0.236199 0.257336 0.210332 0.348847 0.423881 0.044265 0.069673 1.807177 0.173735 0.018811 0.419409 0.611973 0.604545 0.077852 0.120037 0.245034 0.311484 0.008705 0.044261 0.296636 0.139538 0.089586 0.196961 1.739990 0.129836 0.268491 0.054679 0.076701 0.108882 0.366317 0.697264 0.442472 0.682139 0.508851 0.990012 0.584262 0.597054 5.306834 0.119013 4.145067 0.159069 4.273607 1.112727 0.078281 0.064105 1.033739 0.111660 0.232523 10.649107 0.137500 6.312358 2.592692 0.249060 0.182287 0.302936 0.619632 0.299648 1.702745 0.656604 0.023918 0.390322 0.748683 1.136863 0.049906 0.131932 0.185202 1.798853 0.099849 0.346960 2.020366 0.696175 0.481306 1.898718 0.094464 0.361819 0.165001 2.457121 7.803902 0.654683 1.338132 0.571468 0.095131 0.089613 0.296501 6.472279 0.248862 0.400547 0.098369 0.140825 0.245841 2.188158 3.151815 0.189510 0.249313 


Final LogLikelihood: -294784.314876

AIC score: 591536.629751 / AICc score: 592331.088768 / BIC score: 597577.264794
Free parameters (model + branch lengths): 984

WARNING: Best ML tree contains 1 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /expanse/projects/ngbt/backend/expanse_workspace/NGBW-JOB-RAXMLNG_XSEDE-14F4672B97FA4ACF9C9B77052E97F0CE/T1.raxml.bestTreeCollapsed
Best ML tree saved to: /expanse/projects/ngbt/backend/expanse_workspace/NGBW-JOB-RAXMLNG_XSEDE-14F4672B97FA4ACF9C9B77052E97F0CE/T1.raxml.bestTree
All ML trees saved to: /expanse/projects/ngbt/backend/expanse_workspace/NGBW-JOB-RAXMLNG_XSEDE-14F4672B97FA4ACF9C9B77052E97F0CE/T1.raxml.mlTrees
Best ML tree with Felsenstein bootstrap (FBP) support values saved to: /expanse/projects/ngbt/backend/expanse_workspace/NGBW-JOB-RAXMLNG_XSEDE-14F4672B97FA4ACF9C9B77052E97F0CE/T1.raxml.support
Optimized model saved to: /expanse/projects/ngbt/backend/expanse_workspace/NGBW-JOB-RAXMLNG_XSEDE-14F4672B97FA4ACF9C9B77052E97F0CE/T1.raxml.bestModel
Bootstrap trees saved to: /expanse/projects/ngbt/backend/expanse_workspace/NGBW-JOB-RAXMLNG_XSEDE-14F4672B97FA4ACF9C9B77052E97F0CE/T1.raxml.bootstraps

Execution log saved to: /expanse/projects/ngbt/backend/expanse_workspace/NGBW-JOB-RAXMLNG_XSEDE-14F4672B97FA4ACF9C9B77052E97F0CE/T1.raxml.log

Analysis started: 13-Feb-2023 06:47:18 / finished: 13-Feb-2023 10:49:21

Elapsed time: 14522.800 seconds (this run) / 33313.559 seconds (total with restarts)

Consumed energy: 3260.028 Wh (= 16 km in an electric car, or 82 km with an e-scooter!)

